Mir-30-P1b

MirGeneDB ID

Cja-Mir-30-P1b

Family name

MIR-30 (all species)

Seed

UUUCAGU

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-30-P1a Cja-Mir-30-P1d Cja-Mir-30-P2a Cja-Mir-30-P2b Cja-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Eca-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Laf-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021918.1: 72593837-72593899 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAGGUAUAUUGCUGUUGACAGUGAGCAACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCCAUAGAUGGGCUUUCAGUCGGAUGUUUGCAGCUGCCUACUGCCUUGGACUUCAGGGACUACU

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Structure

        10          20        30        40        50        60  
GAAGGUAUAUUGCUGUUGA--|    A   A            UC           GUGAAGC 
                     CAGUG GCA CUGUAAACAUCC  GACUGGAAGCU       \
                     GUCAU CGU GACGUUUGUAGG  CUGACUUUCGG       C
UCAUCAGGGACUUCAGGUUCC^    C   C            --           GUAGAUA 
 120       110       100        90          80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Cja-Mir-30-P1b_5p* (predicted)

mirBase accession

None

Sequence

0- UGUAAACAUCCUCGACUGGAAGCU -24

Get sequence

Mature sequence

Cja-Mir-30-P1b_3p

mirBase accession

None

Sequence

41- CUUUCAGUCGGAUGUUUGCAGC -63

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