| MirGeneDB ID | Cja-Mir-30-P2a |
|---|---|
| Family name | MIR-30 (all species) |
| Seed | GUAAACA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-30-P1a Cja-Mir-30-P1b Cja-Mir-30-P1d Cja-Mir-30-P2b Cja-Mir-30-P2d |
| Orthologues | Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Laf-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021930.1: 60925366-60925425 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AAGUCCUGCUUUAAACCGAGUUUCAGUUCAUGUAAACAUCCUACACUCAGCUGUAAUACAUGGAUUGGCUGAGAGGUGGAUGUUUACUUCAGCUGACUUGGAAUAUCAACCAAUUAACAUGet precursor sequence |
| Structure | 10 20 30 40 50 AAGUCCUGCUUUAAACC----| UU CAU U A- GUAAUA GAG UCAGUU GUAAACAUCC AC CUCAGCU C UUC AGUCGA CAUUUGUAGG UG GAGUCGG A UACAAUUAACCAACUAUAAGG^ -- CUU - GA UUAGGU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-30-P2a_5p |
| mirBase accession | None |
| Sequence |
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
|
| Star sequence | Cja-Mir-30-P2a_3p* |
| mirBase accession | None |
| Sequence |
38- CUGAGAGGUGGAUGUUUACUUC -60
Get sequence
|
