Mir-30-P2a

MirGeneDB ID

Bta-Mir-30-P2a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-30b

Paralogues

Bta-Mir-30-P1a Bta-Mir-30-P1b Bta-Mir-30-P1d Bta-Mir-30-P2b Bta-Mir-30-P2d

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Cfa-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037341.1: 7045583-7045642 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2a)

Mir-30-P1a NC_037341.1: 7041143-7041204 [+] UCSC Ensembl
Mir-30-P2a NC_037341.1: 7045583-7045642 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUCCUGCUUUAAACCAAGUUUUCAGUUCAUGUAAACAUCCUACACUCAGCUGUAACACACGAGUCGGCUGGGAGGUGGAUGUUUACUUCAGCUGACUUGGACUGUCAGCCAUUAACACG

Get precursor sequence

Structure

        10        20          30        40         50         
AGUCCUGCUUUAAACCAAGUUU--|     CAU          U  A-       GUAACA 
                        UCAGUU   GUAAACAUCC AC  CUCAGCU      C
                        AGUCGA   CAUUUGUAGG UG  GGGUCGG      A
GCACAAUUACCGACUGUCAGGUUC^     CUU          -  GA       CUGAGC 
.       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-30-P2a_5p

mirBase accession

MIMAT0003547

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

Get sequence

Proposed targets

TargetScanVert: bta-miR-30b-5p

Star sequence

Bta-Mir-30-P2a_3p*

mirBase accession

MIMAT0012534

Sequence

38- CUGGGAGGUGGAUGUUUACUUC -60

Get sequence

Proposed targets

TargetScanVert: bta-miR-30b-3p