MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-30-P1a  Gja-Mir-30-P1b  Gja-Mir-30-P1d  Gja-Mir-30-P2b  Gja-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cja-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Eca-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Laf-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmr-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Neu-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pab-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015176490.1: 308088-308147 [-]
Precursor
(pre-Mir +30nt flank)
UUCGUUUUGUCUCCACUGAUCCUUAGUUCCUGUAAACAUCCUACACUCAGCUCUGACACACGGAACGGCUGGGAGGUGGAUGUUUGCUUCAACUGAUUUGGAAAGGCAGCCGCCCCGCUU
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Structure
        10        20           30        40         50         
UUCGUUUUGUCUCCACUGA   ---|     CCU          U  A-       CUGACA 
                   UCC   UUAGUU   GUAAACAUCC AC  CUCAGCU      C
                   AGG   AGUCAA   CGUUUGUAGG UG  GGGUCGG      A
UUCGCCCCGCCGACGGAA-   UUU^     CUU          -  GA       CAAGGC 
.       110        100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-30-P2a_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Gja-Mir-30-P2a_3p* (predicted)
mirBase accessionNone
Sequence 
38- CUGGGAGGUGGAUGUUUGCUUC -60
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