Mir-30-P2a

MirGeneDB ID

Hsa-Mir-30-P2a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-30b

Paralogues

Hsa-Mir-30-P1a Hsa-Mir-30-P1b Hsa-Mir-30-P1d Hsa-Mir-30-P2b Hsa-Mir-30-P2d

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Laf-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr8: 134800532-134800591 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2a)

Mir-30-P2a chr8: 134800532-134800591 [-] UCSC Ensembl
Mir-30-P1a chr8: 134804879-134804940 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGUCCUGCUUUAAACCAAGUUUCAGUUCAUGUAAACAUCCUACACUCAGCUGUAAUACAUGGAUUGGCUGGGAGGUGGAUGUUUACUUCAGCUGACUUGGAAUGUCAACCAAUUAACAU

Get precursor sequence

Structure

        10            20        30        40         50         
AAGUCCUGCUUUAAACC----|  UU      CAU          U  A-       GUAAUA 
                     AAG  UCAGUU   GUAAACAUCC AC  CUCAGCU      C
                     UUC  AGUCGA   CAUUUGUAGG UG  GGGUCGG      A
UACAAUUAACCAACUGUAAGG^  --      CUU          -  GA       UUAGGU 
.       110       100          90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-30-P2a_5p

mirBase accession

MIMAT0000420

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

Get sequence

Proposed targets

microrna.org: MIMAT0000420
TargetScanVert: hsa-miR-30b-5p
TargetMiner: hsa-miR-30b-5p
miRDB: MIMAT0000420

Star sequence

Hsa-Mir-30-P2a_3p*

mirBase accession

MIMAT0004589

Sequence

38- CUGGGAGGUGGAUGUUUACUUC -60

Get sequence

Proposed targets

microrna.org: MIMAT0004589
TargetScanVert: hsa-miR-30b-3p
TargetMiner: hsa-miR-30b-3p
miRDB: MIMAT0004589