MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-30b
Paralogues Oan-Mir-30-P1a  Oan-Mir-30-P1b  Oan-Mir-30-P1d  Oan-Mir-30-P2b  Oan-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Ocu-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041731.1: 6885357-6885416 [-]
Clustered miRNAs
(< 50kb from Mir-30-P2a)
Mir-30-P2a NC_041731.1: 6885357-6885416 [-]
Mir-30-P1a NC_041731.1: 6889147-6889208 [-]
Precursor
(pre-Mir +30nt flank)
GCCCGGCCGGCAAAACCGAGUUCGAGUUCAUGUAAACAUCCUACACUCAGCUGUGACCCACCCAGCGGCUGGGAGGGGGAUGUUUGCUUCAACCGACUUGGAACCGCAGCCGGAAGACCC
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Structure
        10            20        30        40        50         
GCCCGGCCGGCAAAACC----|   U  A   CAU           ACA       GUGACC 
                     GAGU CG GUU   GUAAACAUCCU   CUCAGCU      C
                     UUCA GC CAA   CGUUUGUAGGG   GGGUCGG      A
CCCAGAAGGCCGACGCCAAGG^   -  -   CUU           GGA       CGACCC 
.       110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-30-P2a_5p

mirBase accessionMIMAT0007043
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Oan-Mir-30-P2a_3p*

mirBase accessionMIMAT0007044
Sequence
38- CUGGGAGGGGGAUGUUUGCUUC -60
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