MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-30b
Paralogues Cfa-Mir-30-P1a  Cfa-Mir-30-P1b  Cfa-Mir-30-P1d  Cfa-Mir-30-P2b  Cfa-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cja-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Eca-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Laf-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmr-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Neu-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pab-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr13: 30906038-30906097 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2a)		 Mir-30-P2a chr13: 30906038-30906097 [-] UCSC Ensembl
Mir-30-P1a chr13: 30910306-30910365 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUCCUGAUUGAAGCCAAGUUGCAGUUCAUGUAAACAUCCUACACUCAGCUGUAGUACAUGGAUUGGCUGGGAGGUGGAUGUUUACUUCAGCUGACUUGGAAUAUCAACCAUUAACAUC
Get precursor sequence
Structure
        10            20        30        40         50         
AAGUCCUGAUUGAAGCC----|   UG     CAU          U  A-       GUAGUA 
                     AAGU  CAGUU   GUAAACAUCC AC  CUCAGCU      C
                     UUCA  GUCGA   CAUUUGUAGG UG  GGGUCGG      A
CUACAAUUACCAACUAUAAGG^   --     CUU          -  GA       UUAGGU 
.       110       100          90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-30-P2a_5p
mirBase accessionMIMAT0006617
Sequence 
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
Proposed targets TargetScanVert: cfa-miR-30b
miRDB: MIMAT0006617
Star sequence

Cfa-Mir-30-P2a_3p*
mirBase accessionNone
Sequence 
38- CUGGGAGGUGGAUGUUUACUUC -60
Get sequence