MirGeneDB 3.0

MirGeneDB ID

Cfa-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-30d
Paralogues Cfa-Mir-30-P1b  Cfa-Mir-30-P1d  Cfa-Mir-30-P2a  Cfa-Mir-30-P2b  Cfa-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cja-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Eca-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Neu-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)
chr13: 30910306-30910365 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1a)
Mir-30-P2a chr13: 30906038-30906097 [-] UCSC Ensembl
Mir-30-P1a chr13: 30910306-30910365 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUCACAUGUGGUUGAGAAAGCCUGUGGUUGUAAACAUCCCCGACUGGAAGCUGGAAGACAGCAAAGCUUUCAGUCAGAUGUUUGCUGCUACCGGCUGUUCACAGACGGCACUUGGUCU
Get precursor sequence
Structure
        10         20         30        40        50        60
UGCUCACAUGUGGUUGA-   -|   U     U         CCC           GGAAG 
                  GAA AGCC GUGGU GUAAACAUC   GACUGGAAGCU     A
                  CUU UCGG CAUCG CGUUUGUAG   CUGACUUUCGA     C
UCUGGUUCACGGCAGACA   G^   C     U         A--           AACGA 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-30-P1a_5p

mirBase accessionMIMAT0006616
Sequence
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Proposed targets TargetScanVert: cfa-miR-30d
miRDB: MIMAT0006616
Star sequence

Cfa-Mir-30-P1a_3p*

mirBase accessionNone
Sequence
38- CUUUCAGUCAGAUGUUUGCUGC -60
Get sequence