Mir-30-P1a

MirGeneDB ID

Loc-Mir-30-P1a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-30-P1b Loc-Mir-30-P1d Loc-Mir-30-P2a Loc-Mir-30-P2b Loc-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG11: 8165237-8165299 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AUAAGGAAUUUAAACUUGGUAGUCUGGUACUGUAAACAUCCCCGACUGGAAGCUGUAAAAUAACAUCUGAGCUUUCAGUCAGAUGUUUGCUGCAACCGGCUGCUUUCAGCUCCUUGGAUACAA

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Structure

        10          20        30         40        50        60  
AUAAGGAAUUUAAACUU--|    U     ACU-         CCC           GUAAAAU 
                   GGUAG CUGGU    GUAAACAUC   GACUGGAAGCU       \
                   UCGUC GGCCA    CGUUUGUAG   CUGACUUUCGA       A
AACAUAGGUUCCUCGACUU^    -     ACGU         A--           GUCUACA 
 120       110       100         90          80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-30-P1a_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

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Star sequence

Loc-Mir-30-P1a_3p*

mirBase accession

None

Sequence

41- CUUUCAGUCAGAUGUUUGCUGC -63

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