Mir-30-P2b

MirGeneDB ID

Loc-Mir-30-P2b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-30-P1a Loc-Mir-30-P1b Loc-Mir-30-P1d Loc-Mir-30-P2a Loc-Mir-30-P2d

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cja-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Eca-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gja-Mir-30-P2b Gmo-Mir-30-P2b Hsa-Mir-30-P2b Laf-Mir-30-P2b Lch-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmr-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Neu-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pab-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG16: 10640237-10640298 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUUCUCACAAGAGCUCCGAGAUGAAGGCAGUGUAAACAUCCUACACUCUCAGCUUUGGCAAGUAAAGAGGCUGGGAGAGGGGUGUUUGCGCUCUCUAGCUCGGAAAAGCAACGUCUGAGGAA

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Structure

        10            20        30        40        50        60 
UUUCUCACAAGAGCUCC----|  AUGA   C              ACA         UUGGCA 
                     GAG    AGG AGUGUAAACAUCCU   CUCUCAGCU      A
                     CUC    UCU UCGCGUUUGUGGGG   GAGGGUCGG      G
AAGGAGUCUGCAACGAAAAGG^  GA--   C              A--         AGAAAU 
120       110       100          90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-30-P2b_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Star sequence

Loc-Mir-30-P2b_3p*

mirBase accession

None

Sequence

40- CUGGGAGAGGGGUGUUUGCGCU -62

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