MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-30-P2b

Family name MIR-30 (all species)
Seed GUAAACA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-30c-2
Paralogues Ami-Mir-30-P1a  Ami-Mir-30-P1b  Ami-Mir-30-P1d  Ami-Mir-30-P2a  Ami-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xtr-Mir-30-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017707897.1: 1500946-1501007 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-30-P2b)
Mir-30-P1b NW_017707897.1: 1465843-1465906 [+] UCSC
Mir-30-P2b NW_017707897.1: 1500946-1501007 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCAUUUGUGGAAGCUCUGAGUGACAGGUAUUGUAAACAUCCUACACUCUCAGCUGUGGAAAAUGAGGAAGCUGGGAGAAGGCUGUUUACUCUCCCUGACUUAGAUAGCAGCUGGAGGGAAGA
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Structure
        10            20        30        40        50        60 
CCAUUUGUGGAAGCUCU----|   GA    UAUU       U   ACA         GUGGAA 
                     GAGU  CAGG    GUAAACA CCU   CUCUCAGCU      A
                     UUCA  GUCC    CAUUUGU GGA   GAGGGUCGA      A
AGAAGGGAGGUCGACGAUAGA^   --    CUCU       C   A--         AGGAGU 
120       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Ami-Mir-30-P2b_5p

mirBase accessionMIMAT0038081
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Ami-Mir-30-P2b_3p*

mirBase accessionMIMAT0038083
Sequence
40- CUGGGAGAAGGCUGUUUACUCU -62
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