MirGeneDB ID | Laf-Mir-30-P2b |
Family name |
MIR-30 (all species) |
Seed |
GUAAACA |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-30-P1a
Laf-Mir-30-P1b
Laf-Mir-30-P1d
Laf-Mir-30-P2a
Laf-Mir-30-P2d
|
Orthologues |
Aca-Mir-30-P2b
Ami-Mir-30-P2b
Bta-Mir-30-P2b
Cfa-Mir-30-P2b
Cja-Mir-30-P2b
Cli-Mir-30-P2b
Cmi-Mir-30-P2b
Cpi-Mir-30-P2b
Cpo-Mir-30-P2b
Dno-Mir-30-P2b
Dre-Mir-30-P2b
Eca-Mir-30-P2b
Ete-Mir-30-P2b
Gga-Mir-30-P2b
Gja-Mir-30-P2b
Gmo-Mir-30-P2b
Hsa-Mir-30-P2b
Lch-Mir-30-P2b
Loc-Mir-30-P2b
Mal-Mir-30-P2b
Mdo-Mir-30-P2b
Mml-Mir-30-P2b
Mmr-Mir-30-P2b
Mmu-Mir-30-P2b
Mun-Mir-30-P2b
Neu-Mir-30-P2b
Oan-Mir-30-P2b
Ocu-Mir-30-P2b
Pab-Mir-30-P2b
Pbv-Mir-30-P2b
Rno-Mir-30-P2b
Sha-Mir-30-P2b
Spt-Mir-30-P2b
Sto-Mir-30-P2b
Tgu-Mir-30-P2b
Tni-Mir-30-P2b
Xla-Mir-30-P2b1
Xla-Mir-30-P2b2
Xtr-Mir-30-P2b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010027.1: 94631026-94631087 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCCUAUCAGAGAGCACUAAGUGACAGAUAUUGUAAACAUCCUACACUCUCAGCUGUGGAAAGUAAGAAAGCUGGGAGAAGGCUGUUUACUCUUUCUGCCUUGGAAAUCAACUAAAGAGAAAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCCUAUCAGAGAGCACUAAGUGA--| UAUU U ACA GUGGAA
CAGA GUAAACA CCU CUCUCAGCU A
GUCU CAUUUGU GGA GAGGGUCGA G
CAAAGAGAAAUCAACUAAAGGUUCC^ UUCU C A-- AAGAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Laf-Mir-30-P2b_5p |
mirBase accession | None |
Sequence |
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
|
Star sequence |
Laf-Mir-30-P2b_3p* |
mirBase accession | None |
Sequence |
40- CUGGGAGAAGGCUGUUUACUCU -62
Get sequence
|