MirGeneDB 3.0

MirGeneDB ID

Laf-Mir-30-P2b

Family name MIR-30 (all species)
Seed GUAAACA
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-30-P1a  Laf-Mir-30-P1b  Laf-Mir-30-P1d  Laf-Mir-30-P2a  Laf-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cja-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Eca-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmr-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Neu-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pab-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xtr-Mir-30-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000001905.1_Loxafr3.0)
GL010027.1: 94631026-94631087 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCUAUCAGAGAGCACUAAGUGACAGAUAUUGUAAACAUCCUACACUCUCAGCUGUGGAAAGUAAGAAAGCUGGGAGAAGGCUGUUUACUCUUUCUGCCUUGGAAAUCAACUAAAGAGAAAC
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Structure
        10        20          30        40        50        60 
CCCUAUCAGAGAGCACUAAGUGA--|   UAUU       U   ACA         GUGGAA 
                         CAGA    GUAAACA CCU   CUCUCAGCU      A
                         GUCU    CAUUUGU GGA   GAGGGUCGA      G
CAAAGAGAAAUCAACUAAAGGUUCC^   UUCU       C   A--         AAGAAU 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Wh
Mature sequence

Laf-Mir-30-P2b_5p

mirBase accessionNone
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Laf-Mir-30-P2b_3p*

mirBase accessionNone
Sequence
40- CUGGGAGAAGGCUGUUUACUCU -62
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