Mir-30-P2b

MirGeneDB ID

Cja-Mir-30-P2b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-30-P1a Cja-Mir-30-P1b Cja-Mir-30-P1d Cja-Mir-30-P2a Cja-Mir-30-P2d

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Eca-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gja-Mir-30-P2b Gmo-Mir-30-P2b Hsa-Mir-30-P2b Laf-Mir-30-P2b Lch-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmr-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Neu-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pab-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021918.1: 72568148-72568209 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACCCUAGAAAGCACUGAGUGACAGAUACUGUAAACAUCCUACACUCUCAGCUGUGGAAAAUAAGAAAGCUGGGAGAAGGCUGUUUACUCUCUCUGCCUUGGAAAUCAACUAAGAGAAAUG

Get precursor sequence

Structure

        10            20        30        40        50        60 
CCACCCUAGAAAGCACU----|  UGA    UACU       U   ACA         GUGGAA 
                     GAG   CAGA    GUAAACA CCU   CUCUCAGCU      A
                     UUC   GUCU    CAUUUGU GGA   GAGGGUCGA      A
GUAAAGAGAAUCAACUAAAGG^  C--    CUCU       C   A--         AAGAAU 
120       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Cja-Mir-30-P2b_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Star sequence

Cja-Mir-30-P2b_3p*

mirBase accession

None

Sequence

40- CUGGGAGAAGGCUGUUUACUCU -62

Get sequence