MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-30-P2b

Family name MIR-30 (all species)
Seed GUAAACA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-30c-2
Paralogues Xtr-Mir-30-P1a  Xtr-Mir-30-P1b  Xtr-Mir-30-P1d  Xtr-Mir-30-P2a  Xtr-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cja-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Eca-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Laf-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmr-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Neu-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pab-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr5: 91680395-91680454 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2b)
Mir-30-P2b chr5: 91680395-91680454 [-] UCSC Ensembl
Mir-30-P1b chr5: 91687783-91687845 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACAUGUUUUCCUUCUGAGAGACAGAUACUGUAAACAUCCUACACUCUCAGCUGUGGAAAUACAAAGCUGGGGGAAGGCUGUUUACUCUCUCUGCCUCUAACAGCAGCUGAAAGGAAGU
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Structure
        10          20        30        40        50        60
GGACAUGUUUUCCUUCUG--|   A    UACU       U   ACA         GUGGA 
                    AGAG CAGA    GUAAACA CCU   CUCUCAGCU     A
                    UCUC GUCU    CAUUUGU GGA   GGGGGUCGA     A
UGAAGGAAAGUCGACGACAA^   C    CUCU       C   A--         AACAU 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-30-P2b_5p

mirBase accessionMIMAT0003577
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
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Proposed targets TargetScanVert: xtr-miR-30c
Star sequence

Xtr-Mir-30-P2b_3p*

mirBase accessionNone
Sequence
38- CUGGGGGAAGGCUGUUUACUCU -60
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