MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-30-P1d

Family name MIR-30 (all species)
Seed GUAAACA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-30e
Paralogues Xtr-Mir-30-P1a  Xtr-Mir-30-P1b  Xtr-Mir-30-P2a  Xtr-Mir-30-P2b  Xtr-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cja-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Eca-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Laf-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmr-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Neu-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pab-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr2: 83741908-83741971 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1d)
Mir-30-P1d chr2: 83741908-83741971 [+] UCSC Ensembl
Mir-30-P2d chr2: 83742912-83742972 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGUGAAUGAUAAUGGGCAGUUACAGCCUCUGUAAACAUCCUUGACUGGAAGCUGUGAAAUAAUGAUAGUAGCUUUCAGUCGGAUGUUUACAGCUGCUAGCUGCUGCAGUCCUCUUUUACAUGG
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Structure
        10            20         30        40        50        60  
AAGUGAAUGAUAAUGGG----      -|   CUC           UU           GUGAAAU 
                     CAGUUA CAGC   UGUAAACAUCC  GACUGGAAGCU       A
                     GUCGAU GUCG   ACAUUUGUAGG  CUGACUUUCGA       A
GGUACAUUUUCUCCUGACGUC      C^   ---           --           UGAUAGU 
  120       110       100           90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-30-P1d_5p

mirBase accessionMIMAT0003678
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
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Proposed targets TargetScanVert: xtr-miR-30e
Star sequence

Xtr-Mir-30-P1d_3p*

mirBase accessionNone
Sequence
42- CUUUCAGUCGGAUGUUUACAGC -64
Get sequence