Mir-30-P1d

MirGeneDB ID

Eca-Mir-30-P1d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-30e

Paralogues

Eca-Mir-30-P1a Eca-Mir-30-P1b Eca-Mir-30-P2a Eca-Mir-30-P2b Eca-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009149.1: 17482949-17483012 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1d)

Mir-30-P2d CM009149.1: 17480027-17480087 [-] UCSC Ensembl
Mir-30-P1d CM009149.1: 17482949-17483012 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUCCGUUCUUUCUGGGCAGUCUUUGCUACUGUAAACAUCCUUGACUGGAAGCUGUAAGGUGUUCAGAGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACGGUCGUCCCCGGCUGUG

Get precursor sequence

Structure

        10            20        30        40        50        60  
UCUCCGUUCUUUCUGGG----|     UU  UA            UU           GUAAGGU 
                     CAGUCU  GC  CUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGGA  CG  GACAUUUGUAGG  CUGACUUUCGA       U
GUGUCGGCCCCUGCUGGCACC^     --  GC            --           GGAGACU 
  120       110       100          90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-30-P1d_5p

mirBase accession

MIMAT0012916

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Star sequence

Eca-Mir-30-P1d_3p*

mirBase accession

None

Sequence

42- CUUUCAGUCGGAUGUUUACAGC -64

Get sequence