MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-30-P1d

Family name MIR-30 (all species)
Seed GUAAACA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-30e-1
Paralogues Gmo-Mir-30-P1a  Gmo-Mir-30-P1b  Gmo-Mir-30-P2a  Gmo-Mir-30-P2b  Gmo-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Hsa-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xtr-Mir-30-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_1085: 48764-48828 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1d)
Mir-30-P1d GeneScaffold_1085: 48764-48828 [+] UCSC Ensembl
Mir-30-P2d GeneScaffold_1085: 49082-49141 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGUUUCACUGAUGGCAGCUUGGAGGUGCUGUAAACAUCCUUGACUGGAAGCUGCAUUCUGACCCUUUAAGGCUUUCAGUCGGAUGUUUGCAGCUUCUUGUUGCCCCCGUCAACCAAUGACAAC
Get precursor sequence
Structure
        10          20        30        40        50        60   
GCAGUUUCACUGAUGGCA--| UUG    U             UU           GCAUUCUG 
                    GC   GAGG GCUGUAAACAUCC  GACUGGAAGCU        \
                    CG   UUCU CGACGUUUGUAGG  CUGACUUUCGG        A
CAACAGUAACCAACUGCCCC^ UUG    U             --           AAUUUCCC 
   120       110       100        90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-30-P1d_5p

mirBase accessionMIMAT0044094
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
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Star sequence

Gmo-Mir-30-P1d_3p*

mirBase accessionMIMAT0044095
Sequence
43- CUUUCAGUCGGAUGUUUGCAGC -65
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