Mir-30-P1d1

MirGeneDB ID

Xla-Mir-30-P1d1

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-30e

Paralogues

Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xla-Mir-30-P1d2 Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xla-Mir-30-P2d1 Xla-Mir-30-P2d2

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Tgu-Mir-30-P1d Tni-Mir-30-P1d Xtr-Mir-30-P1d

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030726.1: 85604517-85604580 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAUGGUGUCAGAUGGGCAGUUACAGCCUCUGUAAACAUCCUUGACUGGAAGCUGUGAAAUAAUGUAAGUAGCUUUCAGUCGGAUUUUUACAGCUGCUGGCUGCUACAGUCCUUUUACAAGAUC

Get precursor sequence

Structure

        10            20        30        40        50        60  
GAAUGGUGUCAGAUGGG----|   UA    CU       C    UU           GUGAAAU 
                     CAGU  CAGC  CUGUAAA AUCC  GACUGGAAGCU       A
                     GUCG  GUCG  GACAUUU UAGG  CUGACUUUCGA       A
CUAGAACAUUUUCCUGACAUC^   --    UC       U    --           UGAAUGU 
  120       110       100          90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-30-P1d1_5p

mirBase accession

MIMAT0046576

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Co-mature sequence

Xla-Mir-30-P1d1_3p

mirBase accession

MIMAT0046577

Sequence

42- CUUUCAGUCGGAUUUUUACAGC -64

Get sequence