Mir-30-P2d1

MirGeneDB ID

Xla-Mir-30-P2d1

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xla-Mir-30-P2d2

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Eca-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Laf-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pab-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xtr-Mir-30-P2d

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030726.1: 85606156-85606216 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCUUUACAAAUGAACCAUGCUGCAGUGAUUGUAAACAUCCUACACUCUCAGCUUUGAACAUAAGGUGGCUGGGAGAAGGGUGUUUACACCCCCUGCCAUGGAGAGUCCUCAUUGUCGCCU

Get precursor sequence

Structure

        10            20        30        40        50        60 
UUCUUUACAAAUGAACC----|  CU    UGAU            ACA         UUGAAC 
                     AUG  GCAG    UGUAAACAUCCU   CUCUCAGCU      \
                     UAC  CGUC    ACAUUUGUGGGA   GAGGGUCGG      A
UCCGCUGUUACUCCUGAGAGG^  --    CCCC            A--         UGGAAU 
 .       110       100          90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-30-P2d1_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Star sequence

Xla-Mir-30-P2d1_3p*

mirBase accession

None

Sequence

39- CUGGGAGAAGGGUGUUUACACC -61

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