Mir-30-P2d

MirGeneDB ID

Rno-Mir-30-P2d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-30c-1

Paralogues

Rno-Mir-30-P1a Rno-Mir-30-P1b Rno-Mir-30-P1d Rno-Mir-30-P2a Rno-Mir-30-P2b

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Eca-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Laf-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pab-Mir-30-P2d Pbv-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr5: 139699889-139699949 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2d)

Mir-30-P2d chr5: 139699889-139699949 [-] UCSC Ensembl
Mir-30-P1d chr5: 139702884-139702947 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCCCUUGGCUAUAACCAUGUUGUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGAGCUCAAGGUGGCUGGGAGAGGGUUGUUUACUCCUUCUGCCAUGGAAAACGUCAGCUUGAAGAA

Get precursor sequence

Structure

        10            20        30        40        50        60 
GCCCCUUGGCUAUAACC----|  UU    UGUGU       U   ACA         GUGAGC 
                     AUG  GUAG     GUAAACA CCU   CUCUCAGCU      \
                     UAC  CGUC     CAUUUGU GGG   GAGGGUCGG      U
AAGAAGUUCGACUGCAAAAGG^  --    UUCCU       U   A--         UGGAAC 
 .       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-30-P2d_5p

mirBase accession

MIMAT0000804

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000804
TargetScanVert: rno-miR-30c-5p
miRDB: MIMAT0000804

Star sequence

Rno-Mir-30-P2d_3p*

mirBase accession

MIMAT0004719

Sequence

39- CUGGGAGAGGGUUGUUUACUCC -61

Get sequence

Proposed targets

microrna.org: MIMAT0004719
TargetScanVert: rno-miR-30c-1-3p
miRDB: MIMAT0004719