Mir-30-P2d

MirGeneDB ID

Cli-Mir-30-P2d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-30c-1

Paralogues

Cli-Mir-30-P1a Cli-Mir-30-P1b Cli-Mir-30-P1d Cli-Mir-30-P2b

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Eca-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Laf-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pab-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(colLiv2)

scaffold391: 335122-335181 [-]

Clustered miRNAs
(< 50kb from Mir-30-P2d)

Mir-30-P2d scaffold391: 335122-335181 [-]
Mir-30-P1d scaffold391: 336860-336923 [-]

Precursor
(pre-Mir +30nt flank)

GUAAAUGGGAAUUCACCAUGUUGUAGCACGUGUAAACAUCCUACACUCUCAGCUGUGAACUGAGGUGGCUGGGAGAGGAUUGUUUACUCCUUCUGCCAUGGAGUGAACGUCUGCCGAGCU

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Structure

        10            20        30         40        50        60
GUAAAUGGGAAUUCACC----|  UU    CACGU       -    ACA         GUGAA 
                     AUG  GUAG     GUAAACA UCCU   CUCUCAGCU     C
                     UAC  CGUC     CAUUUGU AGGA   GAGGGUCGG     U
UCGAGCCGUCUGCAAGUGAGG^  --    UUCCU       U    ---         UGGAG 
.       110       100          90        80           70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Li	Mi	Ov	Pe	Te	To

Mature sequence

Cli-Mir-30-P2d_5p

mirBase accession

MIMAT0038453

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

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Star sequence

Cli-Mir-30-P2d_3p*

mirBase accession

MIMAT0038454

Sequence

38- CUGGGAGAGGAUUGUUUACUCC -60

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