Mir-30-P2d

MirGeneDB ID

Sto-Mir-30-P2d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-30-P1a Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Sto-Mir-30-P2a Sto-Mir-30-P2b

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Eca-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Laf-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pab-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01005240.1: 117707-117766 [-]

Precursor
(pre-Mir +30nt flank)

AUCACAGUCCCAACACUGUGCUCUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGGUCUGACUGAGCUGGGAGAGGGAUGUUUGCUCAUUCUGACACAGACUGAGCAGCAACAAGUCA

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Structure

        10            20        30        40        50        60
AUCACAGUCCCAACACU----|  C  U  U   U           ACA         GUGGU 
                     GUG UC AG GUG GUAAACAUCCU   CUCUCAGCU     C
                     CAC AG UC UAC CGUUUGUAGGG   GAGGGUCGA     U
ACUGAACAACGACGAGUCAGA^  -  -  U   U           A--         GUCAG 
.       110       100          90        80          70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Sto-Mir-30-P2d_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

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Star sequence

Sto-Mir-30-P2d_3p*

mirBase accession

None

Sequence

38- CUGGGAGAGGGAUGUUUGCUCA -60

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