Mir-30-P2d

MirGeneDB ID

Tni-Mir-30-P2d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-30-P1a Tni-Mir-30-P1b Tni-Mir-30-P1d Tni-Mir-30-P2a Tni-Mir-30-P2b

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

21: 1387972-1388031 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGAAAUUGCCAAGUAGAUCGUCUCCAGGCAUGUAAACAUCCUACACUCUCAGCUGUGUUGUCAUGGAGCUGGGAGAGGGGUGUUUACGCUUCUGGUGAUGAAGAAACCUCGUCAAGCAUU

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Structure

        10          20        30        40        50        60
UGAAAUUGCCAAGUAGA--|    U     CA            ACA         GUGUU 
                   UCGUC CCAGG  UGUAAACAUCCU   CUCUCAGCU     G
                   AGUAG GGUCU  GCAUUUGUGGGG   GAGGGUCGA     U
UUACGAACUGCUCCAAAGA^    U     UC            A--         GGUAC 
.       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-30-P2d_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

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Star sequence

Tni-Mir-30-P2d_3p*

mirBase accession

None

Sequence

38- CUGGGAGAGGGGUGUUUACGCU -60

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