Mir-30-P2d

MirGeneDB ID

Sha-Mir-30-P2d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

sha-mir-30c

Paralogues

Sha-Mir-30-P1a Sha-Mir-30-P1b Sha-Mir-30-P1d Sha-Mir-30-P2a Sha-Mir-30-P2b

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL849784.1: 539166-539226 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2d)

Mir-30-P1d GL849784.1: 535990-536053 [+] UCSC Ensembl
Mir-30-P2d GL849784.1: 539166-539226 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCUUCAGGAGACAACCAUGAUGUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGAGCUCAAGGUGGCUGGGAGAGGGCUGUUUACUCCUUCUGCCAUGGAAAACCCCAGAUGAACUUC

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Structure

        10            20        30        40        50        60 
CUCUUCAGGAGACAACC----|  AU    UGUGU       U   ACA         GUGAGC 
                     AUG  GUAG     GUAAACA CCU   CUCUCAGCU      \
                     UAC  CGUC     CAUUUGU GGG   GAGGGUCGG      U
CUUCAAGUAGACCCCAAAAGG^  --    UUCCU       C   A--         UGGAAC 
 .       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-30-P2d_5p

mirBase accession

MIMAT0022808

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Star sequence

Sha-Mir-30-P2d_3p*

mirBase accession

None

Sequence

39- CUGGGAGAGGGCUGUUUACUCC -61

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