MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-30c-1
Paralogues Ami-Mir-30-P1a  Ami-Mir-30-P1b  Ami-Mir-30-P1d  Ami-Mir-30-P2a  Ami-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017707671.1: 131847-131907 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-30-P2d)
Mir-30-P2d NW_017707671.1: 131847-131907 [-] UCSC
Mir-30-P1d NW_017707671.1: 135224-135287 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GUAAUCUGGAAUCUACCAUGCCGUAGCAUGUGUAAACAUCCUACACUCUCAGCUGUGAACUCAAGGUGGCUGGGAGAGGGUUGUUUACGCCUUCUGCCAUGGUCUGAACAUCUGGAGGAGU
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Structure
        10        20           30        40        50        60 
GUAAUCUGGAAUCUACCAU     A   U---|        U   ACA         GUGAAC 
                   GCCGU GCA    GUGUAAACA CCU   CUCUCAGCU      \
                   UGGUA CGU    CGCAUUUGU GGG   GAGGGUCGG      U
UGAGGAGGUCUACAAGUC-     C   CUUC^        U   A--         UGGAAC 
 .       110        100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Ami-Mir-30-P2d_5p

mirBase accessionMIMAT0038081
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Ami-Mir-30-P2d_3p*

mirBase accessionMIMAT0038082
Sequence
39- CUGGGAGAGGGUUGUUUACGCC -61
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