MirGeneDB ID | Cmi-Mir-30-P2d |
Family name |
MIR-30 (all species) |
Seed |
GUAAACA |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
Cmi-Mir-30-P1a
Cmi-Mir-30-P1b
Cmi-Mir-30-P1d3
Cmi-Mir-30-P1d4
Cmi-Mir-30-P2a
Cmi-Mir-30-P2b
|
Orthologues |
Aca-Mir-30-P2d
Ami-Mir-30-P2d
Bta-Mir-30-P2d
Cfa-Mir-30-P2d
Cja-Mir-30-P2d
Cli-Mir-30-P2d
Cpi-Mir-30-P2d
Cpo-Mir-30-P2d
Dno-Mir-30-P2d
Dre-Mir-30-P2d
Eca-Mir-30-P2d
Ete-Mir-30-P2d
Gga-Mir-30-P2d
Gja-Mir-30-P2d
Gmo-Mir-30-P2d
Hsa-Mir-30-P2d
Laf-Mir-30-P2d
Lch-Mir-30-P2d
Loc-Mir-30-P2d
Mal-Mir-30-P2d
Mdo-Mir-30-P2d
Mml-Mir-30-P2d
Mmr-Mir-30-P2d
Mmu-Mir-30-P2d
Mun-Mir-30-P2d
Neu-Mir-30-P2d
Oan-Mir-30-P2d
Ocu-Mir-30-P2d
Pab-Mir-30-P2d
Pbv-Mir-30-P2d
Rno-Mir-30-P2d
Sha-Mir-30-P2d
Spt-Mir-30-P2d
Sto-Mir-30-P2d
Tgu-Mir-30-P2d
Tni-Mir-30-P2d
Xla-Mir-30-P2d1
Xla-Mir-30-P2d2
Xtr-Mir-30-P2d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
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Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635890.1: 6106040-6106099 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUGACAAUGCAGUGCUGUGCACUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGGUGUAGCUGAGCUGGGAGGAGGAUGCUUACUCAUUCUGGCACAGAUGGAGCAGCAGCCACGUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUGACAAUGCAGUGCU----| AC U U A ACA GUGGU
GUGC UAG GUG GUAA CAUCCU CUCUCAGCU G
CACG GUC UAC CAUU GUAGGA GAGGGUCGA U
GUGCACCGACGACGAGGUAGA^ -- U U C G-- GUCGA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-30-P2d_5p |
mirBase accession | None |
Sequence |
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
|
Star sequence |
Cmi-Mir-30-P2d_3p* |
mirBase accession | None |
Sequence |
38- CUGGGAGGAGGAUGCUUACUCA -60
Get sequence
|