MirGeneDB 2.1
MirGeneDB ID

Cmi-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-30-P1a  Cmi-Mir-30-P1b  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cmi-Mir-30-P2a  Cmi-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cli-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635890.1: 6106040-6106099 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGACAAUGCAGUGCUGUGCACUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGGUGUAGCUGAGCUGGGAGGAGGAUGCUUACUCAUUCUGGCACAGAUGGAGCAGCAGCCACGUG
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Structure
        10            20        30        40        50        60
GCUGACAAUGCAGUGCU----|   AC   U   U    A      ACA         GUGGU 
                     GUGC  UAG GUG GUAA CAUCCU   CUCUCAGCU     G
                     CACG  GUC UAC CAUU GUAGGA   GAGGGUCGA     U
GUGCACCGACGACGAGGUAGA^   --   U   U    C      G--         GUCGA 
.       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-30-P2d_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Cmi-Mir-30-P2d_3p*
mirBase accessionNone
Sequence 
38- CUGGGAGGAGGAUGCUUACUCA -60
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