MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-30c-1
Paralogues Cpi-Mir-30-P1a  Cpi-Mir-30-P1b  Cpi-Mir-30-P1d  Cpi-Mir-30-P2a  Cpi-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH584691: 5739664-5739724 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2d)
Mir-30-P1d JH584691: 5735578-5735642 [+] UCSC Ensembl
Mir-30-P2d JH584691: 5739664-5739724 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAAUGUGGAAUCUGCCAUGCUGUAGCAUGUGUAAACAUCCUACACUCUCAGCUGUGGACUCAAGGUAGCUGGGAGAGGGUUGUUUACUCCUUCUGCCAUGGACUGAACAUCUGGGGAACC
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Structure
        10        20        30           40        50        60 
AUAAUGUGGAAUCUGCCAUG    A   UGU---|      U   ACA         GUGGAC 
                    CUGU GCA      GUAAACA CCU   CUCUCAGCU      \
                    GGUA CGU      CAUUUGU GGG   GAGGGUCGA      U
CCAAGGGGUCUACAAGUCA-    C   CUUCCU^      U   A--         UGGAAC 
 .       110        100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-30-P2d_5p

mirBase accessionMIMAT0037678
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Cpi-Mir-30-P2d_3p*

mirBase accessionMIMAT0037679
Sequence
39- CUGGGAGAGGGUUGUUUACUCC -61
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