MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-30-P1a  Mal-Mir-30-P1b  Mal-Mir-30-P1d  Mal-Mir-30-P2a  Mal-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884770.1: 884092-884151 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUGUUGUGAAGUAGACUGUCUCCAGGCAUGUAAACAUCCUACACUCUCAGCUGUGUUGUCAUGGAGCUGGGAGAGGGGUGUUUACACUUCUGGUGAUGGAGAAACCUCAUCAAGAUGA
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Structure
        10          20        30        40        50        60
AUUUGUUGUGAAGUAGA--|    U     CA            ACA         GUGUU 
                   CUGUC CCAGG  UGUAAACAUCCU   CUCUCAGCU     G
                   GGUAG GGUCU  ACAUUUGUGGGG   GAGGGUCGA     U
AGUAGAACUACUCCAAAGA^    U     UC            A--         GGUAC 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-30-P2d_5p

mirBase accessionNone
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Mal-Mir-30-P2d_3p*

mirBase accessionNone
Sequence
38- CUGGGAGAGGGGUGUUUACACU -60
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