MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-30c-1
Paralogues Xtr-Mir-30-P1a  Xtr-Mir-30-P1b  Xtr-Mir-30-P1d  Xtr-Mir-30-P2a  Xtr-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cja-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Eca-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Laf-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmr-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Neu-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pab-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr2: 83742912-83742972 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2d)
Mir-30-P1d chr2: 83741908-83741971 [+] UCSC Ensembl
Mir-30-P2d chr2: 83742912-83742972 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUUUCCAAACGAACCAUGCAGCAGUGAUUGUAAACAUCCUACACUCUCAGCUGUGAACAUAAGGUGGCUGGGAGAAGGGUGUUUACUCCCCCUGCCAUGGAGUAGUCCUCAUAUGUUAU
Get precursor sequence
Structure
        10        20          30        40        50        60 
UUCUUUCCAAACGAACCAUGCA--|   UGAUU           ACA         GUGAAC 
                        GCAG     GUAAACAUCCU   CUCUCAGCU      \
                        CGUC     CAUUUGUGGGA   GAGGGUCGG      A
UAUUGUAUACUCCUGAUGAGGUAC^   CCCCU           A--         UGGAAU 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-30-P2d_5p

mirBase accessionMIMAT0003577
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
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Proposed targets TargetScanVert: xtr-miR-30c
Star sequence

Xtr-Mir-30-P2d_3p*

mirBase accessionNone
Sequence
39- CUGGGAGAAGGGUGUUUACUCC -61
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