MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-30-P1b

Family name MIR-30 (all species)
Seed GUAAACA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-30a
Paralogues Xtr-Mir-30-P1a  Xtr-Mir-30-P1d  Xtr-Mir-30-P2a  Xtr-Mir-30-P2b  Xtr-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cja-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Eca-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Laf-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmr-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pab-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr5: 91687783-91687845 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1b)
Mir-30-P2b chr5: 91680395-91680454 [-] UCSC Ensembl
Mir-30-P1b chr5: 91687783-91687845 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCAGGAACUACUGCUGACAGUAUGCGACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGUUGAAGGGCUUUCAGUCAGAUGUUUGCAGCUGCCAACUGCCUUCGUCUUCAAGAGCUUCU
Get precursor sequence
Structure
        10          20        30        40        50        60  
GGCCAGGAACUACUGCUGA--|   AU   A           CUC           GUGAAGC 
                     CAGU  GCG CUGUAAACAUC   GACUGGAAGCU       \
                     GUCA  CGU GACGUUUGUAG   CUGACUUUCGG       A
UCUUCGAGAACUUCUGCUUCC^   AC   C           A--           GAAGUUG 
 120       110       100        90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-30-P1b_5p

mirBase accessionMIMAT0003574
Sequence
0- UGUAAACAUCCUCGACUGGAAGCU -24
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Proposed targets TargetScanVert: xtr-miR-30a-5p
Star sequence

Xtr-Mir-30-P1b_3p*

mirBase accessionMIMAT0003575
Sequence
41- CUUUCAGUCAGAUGUUUGCAGC -63
Get sequence
Proposed targets TargetScanVert: xtr-miR-30a-3p