MirGeneDB 2.1
MirGeneDB ID

Pbv-Mir-30-P1b

Family name MIR-30 (all species)
Seed GUAAACA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-30a
Paralogues Pbv-Mir-30-P1a  Pbv-Mir-30-P1d  Pbv-Mir-30-P2a  Pbv-Mir-30-P2b  Pbv-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)		 KE957005.1: 35883-35946 [+]
Clustered miRNAs
(< 50kb from Mir-30-P1b)		 Mir-30-P1b KE957005.1: 35883-35946 [+]
Mir-30-P2b KE957005.1: 55738-55801 [+]
Precursor
(pre-Mir +30nt flank)
GAAUGAAUAUUGCUGUUGACAGUGAGCGAUUGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCAGCUGCCAACUGCCACAGGCAUCAAACCUUCAG
Get precursor sequence
Structure
        10          20        30        40        50        60  
GAAUGAAUAUUGCUGUU--|A    GA   A            UC           GUGAAGC 
                   G CAGU  GCG UUGUAAACAUCC  GACUGGAAGCU       A
                   C GUCA  CGU GACGUUUGUAGG  CUGACUUUCGG       G
GACUUCCAAACUACGGACA^C    AC   C            --           GGUAGAC 
  120       110       100        90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Pbv-Mir-30-P1b_5p
mirBase accessionMIMAT0038870
Sequence 
0- UGUAAACAUCCUCGACUGGAAGCU -24
Get sequence
Star sequence

Pbv-Mir-30-P1b_3p*
mirBase accessionMIMAT0038871
Sequence 
42- CUUUCAGUCGGAUGUUUGCAGC -64
Get sequence