Mir-30-P1b

MirGeneDB ID

Tni-Mir-30-P1b

Family name

MIR-30 (all species)

Seed

UUUCAGU

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-30-P1a Tni-Mir-30-P1d Tni-Mir-30-P2a Tni-Mir-30-P2b Tni-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

17: 8583486-8583548 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCUCCAGUCCGGUUGGCAGUCGGGGCUACUGUAAACAUCCUUGACUGGAAGCUGGUGUUUAGUUCUGGGGCUUUCAGUCGGAUGUUUGCAGCAGCCAACUGCUAGUGCCAUCGUUACGCCUC

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Structure

        10            20        30        40        50        60  
GCCUCCAGUCCGGUUGG----|   CGG    A            UU           GGUGUUU 
                     CAGU   GGCU CUGUAAACAUCC  GACUGGAAGCU       \
                     GUCA   CCGA GACGUUUGUAGG  CUGACUUUCGG       A
CUCCGCAUUGCUACCGUGAUC^   A--    C            --           GGUCUUG 
 120       110       100          90          80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-30-P1b_5p*

mirBase accession

None

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

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Mature sequence

Tni-Mir-30-P1b_3p

mirBase accession

None

Sequence

41- CUUUCAGUCGGAUGUUUGCAGC -63

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