Mir-30-P1b

MirGeneDB ID

Loc-Mir-30-P1b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-30-P1a Loc-Mir-30-P1d Loc-Mir-30-P2a Loc-Mir-30-P2b Loc-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cja-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Eca-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Hsa-Mir-30-P1b Laf-Mir-30-P1b Lch-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG16: 10636599-10636660 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUGACAAAGAUAGAUGGCAGUACUGGCAACUGUAAACAUCCUUGACUGGAAGCUGGUGCAGAAGAUGGGGCUUUCAGUCGGAUGUUUGCAGCUGCCAACUGCUAUUACCUUCAAAUCCCUCU

Get precursor sequence

Structure

        10            20        30        40        50        60 
UUGACAAAGAUAGAUGG----|   AC     A            UU           GGUGCA 
                     CAGU  UGGCA CUGUAAACAUCC  GACUGGAAGCU      G
                     GUCA  ACCGU GACGUUUGUAGG  CUGACUUUCGG      A
UCUCCCUAAACUUCCAUUAUC^   --     C            --           GGUAGA 
120       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-30-P1b_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Star sequence

Loc-Mir-30-P1b_3p*

mirBase accession

None

Sequence

40- CUUUCAGUCGGAUGUUUGCAGC -62

Get sequence