MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-30-P1b

Family name MIR-30 (all species)
Seed GUAAACA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-30e-2
Paralogues Gmo-Mir-30-P1a  Gmo-Mir-30-P1d  Gmo-Mir-30-P2a  Gmo-Mir-30-P2b  Gmo-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cja-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Eca-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Hsa-Mir-30-P1b  Laf-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmr-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pab-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_109: 2960-3022 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1b)
Mir-30-P2b GeneScaffold_109: 1149-1210 [-] UCSC Ensembl
Mir-30-P1b GeneScaffold_109: 2960-3022 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCUCAGGUCUUUUGGCAGUCGGGGCUACUGUAAACAUCCUUGACUGGAAGCUAGUGCUUUGUCCUGGAGCUUUCAGUCGGAUGUUUGCAGCAGCCAACUGCUAUAGUCCCAUGAUUAGAGC
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Structure
        10            20        30        40        50        60  
CAGCUCAGGUCUUUUGG----|   CGG    A            UU           AGUGCUU 
                     CAGU   GGCU CUGUAAACAUCC  GACUGGAAGCU       \
                     GUCA   CCGA GACGUUUGUAGG  CUGACUUUCGA       U
CGAGAUUAGUACCCUGAUAUC^   A--    C            --           GGUCCUG 
 120       110       100          90          80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-30-P1b_5p

mirBase accessionMIMAT0044094
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
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Star sequence

Gmo-Mir-30-P1b_3p*

mirBase accessionMIMAT0044095
Sequence
41- CUUUCAGUCGGAUGUUUGCAGC -63
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