MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-30-P2b

Family name MIR-30 (all species)
Seed GUAAACA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-30d
Paralogues Gmo-Mir-30-P1a  Gmo-Mir-30-P1b  Gmo-Mir-30-P1d  Gmo-Mir-30-P2a  Gmo-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cja-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Eca-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Hsa-Mir-30-P2b  Laf-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmr-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Neu-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pab-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xtr-Mir-30-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_109: 1149-1210 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2b)
Mir-30-P2b GeneScaffold_109: 1149-1210 [-] UCSC Ensembl
Mir-30-P1b GeneScaffold_109: 2960-3022 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUGCCCACGGAUAUUCGAGUUCCGGGUAGUGUAAACAUCCUACACUUUCGGCGUCUGCCCUCAUGUGGCCGGGAGUGGGACUGUUUGCGCUGCCCGGCUCGGAACAACAUGGCUAGAUCUG
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Structure
        10            20        30         40        50        60 
UAUGCCCACGGAUAUUC----|  UU                -   UA    UU    GUCUGCC 
                     GAG  CCGGGUAGUGUAAACA UCC  CACU  CGGC       \
                     CUC  GGCCCGUCGCGUUUGU AGG  GUGA  GCCG       C
GUCUAGAUCGGUACAACAAGG^  --                C   --    GG    GUGUACU 
120       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-30-P2b_5p

mirBase accessionMIMAT0044098
Sequence
0- UGUAAACAUCCUACACUUUCGGC -23
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Star sequence

Gmo-Mir-30-P2b_3p*

mirBase accessionMIMAT0044099
Sequence
40- CGGGAGUGGGACUGUUUGCGCU -62
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