Mir-30-P2b

MirGeneDB ID

Hsa-Mir-30-P2b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-30c-2

Paralogues

Hsa-Mir-30-P1a Hsa-Mir-30-P1b Hsa-Mir-30-P1d Hsa-Mir-30-P2a Hsa-Mir-30-P2d

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gja-Mir-30-P2b Gmo-Mir-30-P2b Lch-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr6: 71376964-71377025 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2b)

Mir-30-P2b chr6: 71376964-71377025 [-] UCSC Ensembl
Mir-30-P1b chr6: 71403554-71403616 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAUCCUAGAGAGCACUGAGCGACAGAUACUGUAAACAUCCUACACUCUCAGCUGUGGAAAGUAAGAAAGCUGGGAGAAGGCUGUUUACUCUUUCUGCCUUGGAAGUCAACUAAAGAGAAAU

Get precursor sequence

Structure

        10            20        30        40        50        60 
CCAUCCUAGAGAGCACU----|  CGA    UACU       U   ACA         GUGGAA 
                     GAG   CAGA    GUAAACA CCU   CUCUCAGCU      A
                     UUC   GUCU    CAUUUGU GGA   GAGGGUCGA      G
UAAAGAGAAAUCAACUGAAGG^  C--    UUCU       C   A--         AAGAAU 
120       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	3-	3-	3-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	5-	5-	5-	5-	5-	5-	5-	6-	6-	6-	6-	6-

Mature sequence

Hsa-Mir-30-P2b_5p

mirBase accession

MIMAT0000244

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000244
TargetScanVert: hsa-miR-30c-5p
TargetMiner: hsa-miR-30c-5p
miRDB: MIMAT0000244

Star sequence

Hsa-Mir-30-P2b_3p*

mirBase accession

MIMAT0004550

Sequence

40- CUGGGAGAAGGCUGUUUACUCU -62

Get sequence

Proposed targets

microrna.org: MIMAT0004550
TargetScanVert: hsa-miR-30c-2-3p
TargetMiner: hsa-miR-30c-2-3p
miRDB: MIMAT0004550