Mir-30-P2b

MirGeneDB ID

Mmu-Mir-30-P2b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-30c-2

Paralogues

Mmu-Mir-30-P1a Mmu-Mir-30-P1b Mmu-Mir-30-P1d Mmu-Mir-30-P2a Mmu-Mir-30-P2d

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cja-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Eca-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gja-Mir-30-P2b Gmo-Mir-30-P2b Hsa-Mir-30-P2b Laf-Mir-30-P2b Lch-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmr-Mir-30-P2b Mun-Mir-30-P2b Neu-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pab-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr1: 23291714-23291775 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2b)

Mir-30-P1b chr1: 23272274-23272336 [+] UCSC Ensembl
Mir-30-P2b chr1: 23291714-23291775 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGCUCUAGAGAGCACUGAGUGACAGAUAUUGUAAACAUCCUACACUCUCAGCUGUGAAAAGUAAGAAAGCUGGGAGAAGGCUGUUUACUCUCUCUGCCUUGGAAAUCAGCUAAGAGAAAUG

Get precursor sequence

Structure

        10            20        30        40        50        60 
CUGCUCUAGAGAGCACU----|  UGA    UAUU       U   ACA         GUGAAA 
                     GAG   CAGA    GUAAACA CCU   CUCUCAGCU      A
                     UUC   GUCU    CAUUUGU GGA   GAGGGUCGA      G
GUAAAGAGAAUCGACUAAAGG^  C--    CUCU       C   A--         AAGAAU 
120       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-30-P2b_5p

mirBase accession

MIMAT0000514

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000514
TargetScanVert: mmu-miR-30c-5p
miRDB: MIMAT0000514

Co-mature sequence

Mmu-Mir-30-P2b_3p

mirBase accession

MIMAT0005438

Sequence

40- CUGGGAGAAGGCUGUUUACUCU -62

Get sequence

Proposed targets

microrna.org: MIMAT0005438
TargetScanVert: mmu-miR-30c-2-3p
miRDB: MIMAT0005438