Mir-30-P2b

MirGeneDB ID

Eca-Mir-30-P2b

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-30c-2

Paralogues

Eca-Mir-30-P1a Eca-Mir-30-P1b Eca-Mir-30-P1d Eca-Mir-30-P2a Eca-Mir-30-P2d

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cja-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gja-Mir-30-P2b Gmo-Mir-30-P2b Hsa-Mir-30-P2b Laf-Mir-30-P2b Lch-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmr-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Neu-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pab-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009167.1: 63868913-63868974 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACCCUAGAGAGCACUGAGUGACAGAUACUGUAAACAUCCUACACUCUCAGCUGUGGAAAGUGAGAAAGCUGGGAGAAGGCUGUUUACUCUCUCUGCCUUGGAAAUCAACUAAAGAGAAAU

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Structure

        10            20        30        40        50        60 
CCACCCUAGAGAGCACU----|  UGA    UACU       U   ACA         GUGGAA 
                     GAG   CAGA    GUAAACA CCU   CUCUCAGCU      A
                     UUC   GUCU    CAUUUGU GGA   GAGGGUCGA      G
UAAAGAGAAAUCAACUAAAGG^  C--    CUCU       C   A--         AAGAGU 
120       110       100          90        80          70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-30-P2b_5p

mirBase accession

MIMAT0012915

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

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Star sequence

Eca-Mir-30-P2b_3p*

mirBase accession

None

Sequence

40- CUGGGAGAAGGCUGUUUACUCU -62

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