Mir-30-P2d

MirGeneDB ID

Eca-Mir-30-P2d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-30c

Paralogues

Eca-Mir-30-P1a Eca-Mir-30-P1b Eca-Mir-30-P1d Eca-Mir-30-P2a Eca-Mir-30-P2b

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Laf-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pab-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009149.1: 17480027-17480087 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2d)

Mir-30-P2d CM009149.1: 17480027-17480087 [-] UCSC Ensembl
Mir-30-P1d CM009149.1: 17482949-17483012 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCCUGAGGCUGUAACCAUGCUGUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGAGCUCAAGGUGGCUGGGAGAGGGUUGUUUACUCCUUCUGCCAUGGAAAGCGUCCACUGAAGAAG

Get precursor sequence

Structure

        10            20        30        40        50        60 
ACCCUGAGGCUGUAACC----|  CU    UGUGU       U   ACA         GUGAGC 
                     AUG  GUAG     GUAAACA CCU   CUCUCAGCU      \
                     UAC  CGUC     CAUUUGU GGG   GAGGGUCGG      U
GAAGAAGUCACCUGCGAAAGG^  --    UUCCU       U   A--         UGGAAC 
 .       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-30-P2d_5p

mirBase accession

MIMAT0012915

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Star sequence

Eca-Mir-30-P2d_3p*

mirBase accession

None

Sequence

39- CUGGGAGAGGGUUGUUUACUCC -61

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