MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Horse (Equus caballus)
MiRBase ID eca-mir-30c
Paralogues Eca-Mir-30-P1a  Eca-Mir-30-P1b  Eca-Mir-30-P1d  Eca-Mir-30-P2a  Eca-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cja-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Laf-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmr-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Neu-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pab-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009149.1: 17480027-17480087 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2d)		 Mir-30-P2d CM009149.1: 17480027-17480087 [-] UCSC Ensembl
Mir-30-P1d CM009149.1: 17482949-17483012 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCCUGAGGCUGUAACCAUGCUGUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGAGCUCAAGGUGGCUGGGAGAGGGUUGUUUACUCCUUCUGCCAUGGAAAGCGUCCACUGAAGAAG
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Structure
        10            20        30        40        50        60 
ACCCUGAGGCUGUAACC----|  CU    UGUGU       U   ACA         GUGAGC 
                     AUG  GUAG     GUAAACA CCU   CUCUCAGCU      \
                     UAC  CGUC     CAUUUGU GGG   GAGGGUCGG      U
GAAGAAGUCACCUGCGAAAGG^  --    UUCCU       U   A--         UGGAAC 
 .       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-30-P2d_5p
mirBase accessionMIMAT0012915
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Eca-Mir-30-P2d_3p*
mirBase accessionNone
Sequence 
39- CUGGGAGAGGGUUGUUUACUCC -61
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