MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues Dre-Mir-30-P1a  Dre-Mir-30-P1b  Dre-Mir-30-P1d  Dre-Mir-30-P1o1  Dre-Mir-30-P2a  Dre-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr19: 42101719-42101778 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUGCGGCGUUUUUUUGUGUGGCCAGGUGUGUAAACAUCCUACACUCUCAGCUGUGACGUCACCAAGCUGGGAGAGGGAUGUUUACUCUCUUUGCCACAAAAUGAAUCUUCAGGAAUGC
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Structure
        10          20        30        40        50        60
UCCUGCGGCGUUUUUUUG--|     C   UGU           ACA         GUGAC 
                    UGUGGC AGG   GUAAACAUCCU   CUCUCAGCU     G
                    ACACCG UUC   CAUUUGUAGGG   GAGGGUCGA     U
CGUAAGGACUUCUAAGUAAA^     U   UCU           A--         ACCAC 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-30-P2d_5p

mirBase accessionNone
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Dre-Mir-30-P2d_3p*

mirBase accessionNone
Sequence
38- CUGGGAGAGGGAUGUUUACUCU -60
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