Mir-30-P1d

MirGeneDB ID

Dre-Mir-30-P1d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Zebrafish (Danio rerio)

MiRBase ID

Paralogues

Dre-Mir-30-P1a Dre-Mir-30-P1b Dre-Mir-30-P1o1 Dre-Mir-30-P2a Dre-Mir-30-P2b Dre-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr19: 42099800-42099865 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUGUGUCGUUUCUGGCAGCUUGGGGGCGCUGUAAACAUCCUUGACUGGAAGCUGGGUGUAGGGUUUGUGAAGGCUUUCAGUCGGAUGUUUGCAGCACUCUGCUUCCCUUAACUCUGCACAACCAG

Get precursor sequence

Structure

        10             20        30        40        50        60   
GCUGUGUCGUUUCUGGC-----|  UUG    C             UU           GGGUGUAG 
                      AGC   GGGG GCUGUAAACAUCC  GACUGGAAGCU        G
                      UCG   UCUC CGACGUUUGUAGG  CUGACUUUCGG        G
GACCAACACGUCUCAAUUCCCU^  ---    A             --           AAGUGUUU 
    120       110          100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-30-P1d_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Star sequence

Dre-Mir-30-P1d_3p*

mirBase accession

None

Sequence

44- CUUUCAGUCGGAUGUUUGCAGC -66

Get sequence