MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-30-P1d

Family name MIR-30 (all species)
Seed GUAAACA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-30e
Paralogues Rno-Mir-30-P1a  Rno-Mir-30-P1b  Rno-Mir-30-P2a  Rno-Mir-30-P2b  Rno-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cja-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Eca-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Laf-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmr-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Neu-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pab-Mir-30-P1d  Pbv-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xtr-Mir-30-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr5: 139702884-139702947 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1d)
Mir-30-P2d chr5: 139699889-139699949 [-] UCSC Ensembl
Mir-30-P1d chr5: 139702884-139702947 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUUUAUUUUUCAGGGCAGUCUUUGCUACUGUAAACAUCCUUGACUGGAAGCUGUAAGGUGUUGAGAGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACAGUCGUCCCUGGCUGCG
Get precursor sequence
Structure
        10            20        30        40        50        60  
CUCUUUAUUUUUCAGGG----|     UU  UA            UU           GUAAGGU 
                     CAGUCU  GC  CUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGGA  CG  GACAUUUGUAGG  CUGACUUUCGA       U
GCGUCGGUCCCUGCUGACACC^     --  GC            --           GGAGAGU 
  120       110       100          90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Rno-Mir-30-P1d_5p

mirBase accessionMIMAT0000805
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
Get sequence
Proposed targets microrna.org: MIMAT0000805
TargetScanVert: rno-miR-30e-5p
miRDB: MIMAT0000805
Star sequence

Rno-Mir-30-P1d_3p*

mirBase accessionMIMAT0004720
Sequence
42- CUUUCAGUCGGAUGUUUACAGC -64
Get sequence
Proposed targets microrna.org: MIMAT0004720
TargetScanVert: rno-miR-30e-3p
miRDB: MIMAT0004720