Mir-30-P1d4

MirGeneDB ID

Cmi-Mir-30-P1d4

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-30-P1a Cmi-Mir-30-P1b Cmi-Mir-30-P1d3 Cmi-Mir-30-P2a Cmi-Mir-30-P2b Cmi-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xtr-Mir-30-P1d

Node of Origin (locus)

Chondrichthyes

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635890.1: 6103426-6103488 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUGUUGCUGAUUACUGGCAGGUCGUGCUGCUGUAAACAUCCUUGACUGGAAGCUGUGUGGUGACUUGAGGGCUUUCAGUCAGAUGUUUGCAGCUGUUGGCUGCCGUUUGCAUCAGUGAAACCC

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Structure

        10        20          30        40        50        60  
GUGUUGCUGAUUACUGGCA   C  --| U            CU            GUGUGGU 
                   GGU GU  GC GCUGUAAACAUC  UGACUGGAAGCU       \
                   CCG CG  UG CGACGUUUGUAG  ACUGACUUUCGG       G
CCCAAAGUGACUACGUUUG   U  GU^ U            --            GAGUUCA 
 120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-30-P1d4_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Star sequence

Cmi-Mir-30-P1d4_3p*

mirBase accession

None

Sequence

41- CUUUCAGUCAGAUGUUUGCAGC -63

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