MirGeneDB 2.1
MirGeneDB ID

Cmi-Mir-30-P1d4

Family name MIR-30 (all species)
Seed GUAAACA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-30-P1a  Cmi-Mir-30-P1b  Cmi-Mir-30-P1d3  Cmi-Mir-30-P2a  Cmi-Mir-30-P2b  Cmi-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cli-Mir-30-P1d  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d4  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xtr-Mir-30-P1d 
Node of Origin (locus) Chondrichthyes
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635890.1: 6103426-6103488 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUUGCUGAUUACUGGCAGGUCGUGCUGCUGUAAACAUCCUUGACUGGAAGCUGUGUGGUGACUUGAGGGCUUUCAGUCAGAUGUUUGCAGCUGUUGGCUGCCGUUUGCAUCAGUGAAACCC
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Structure
        10        20          30        40        50        60  
GUGUUGCUGAUUACUGGCA   C  --| U            CU            GUGUGGU 
                   GGU GU  GC GCUGUAAACAUC  UGACUGGAAGCU       \
                   CCG CG  UG CGACGUUUGUAG  ACUGACUUUCGG       G
CCCAAAGUGACUACGUUUG   U  GU^ U            --            GAGUUCA 
 120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-30-P1d4_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCUUGACUGGAAGCU -24
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Star sequence

Cmi-Mir-30-P1d4_3p*
mirBase accessionNone
Sequence 
41- CUUUCAGUCAGAUGUUUGCAGC -63
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