Mir-30-P1d

MirGeneDB ID

Gga-Mir-30-P1d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-30e

Paralogues

Gga-Mir-30-P1a Gga-Mir-30-P1b Gga-Mir-30-P2a Gga-Mir-30-P2b Gga-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

23: 5078861-5078924 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1d)

Mir-30-P1d 23: 5078861-5078924 [+] UCSC Ensembl
Mir-30-P2d 23: 5080082-5080142 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCCGCACCCUUCGGGGCAGUCAUCGCUGCUGUAAACAUCCUUGACUGGAAGCUGUGAGGUGUCAGCGGGGGCUUUCAGUCGGAUGUUUACAGCUGCAGGCUGCUGCAGUCACCUGGGUGCUGC

Get precursor sequence

Structure

        10            20        30        40        50        60  
UCCCGCACCCUUCGGGG----|    AUC  U             UU           GUGAGGU 
                     CAGUC   GC GCUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGG   CG CGACAUUUGUAGG  CUGACUUUCGG       U
CGUCGUGGGUCCACUGACGUC^    A--  U             --           GGGCGAC 
  120       110       100          90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-30-P1d_5p

mirBase accession

MIMAT0001177

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Proposed targets

TargetScanVert: gga-miR-30e-5p
miRDB: MIMAT0001177

Star sequence

Gga-Mir-30-P1d_3p*

mirBase accession

MIMAT0026538

Sequence

42- CUUUCAGUCGGAUGUUUACAGC -64

Get sequence

Proposed targets

TargetScanVert: gga-miR-30e-3p
miRDB: MIMAT0026538