Mir-30-P1d

MirGeneDB ID

Tni-Mir-30-P1d

Family name

MIR-30 (all species)

Seed

UUUCAGU

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-30-P1a Tni-Mir-30-P1b Tni-Mir-30-P2a Tni-Mir-30-P2b Tni-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

21: 1387761-1387825 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCAGUCUAUUAUUGGCAACCUGGAGGAGCUGUAAACAUCCUUGACUGGAAGCUGGGGUUUAAACGGUGAAGGCUUUCAGUCGGAUGUUUGCAGCAUCUUAUUGCCUUUAACAGCCUCCUCUUAC

Get precursor sequence

Structure

        10        20          30        40        50        60   
CUCAGUCUAUUAUUGGCAACCUG--|  GA             UU           GGGGUUUA 
                         GAG  GCUGUAAACAUCC  GACUGGAAGCU        \
                         UUC  CGACGUUUGUAGG  CUGACUUUCGG        A
CAUUCUCCUCCGACAAUUUCCGUUA^  UA             --           AAGUGGCA 
   120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-30-P1d_5p*

mirBase accession

None

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Mature sequence

Tni-Mir-30-P1d_3p

mirBase accession

None

Sequence

43- CUUUCAGUCGGAUGUUUGCAGC -65

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