MirGeneDB ID | Laf-Mir-30-P1d |
Family name |
MIR-30 (all species) |
Seed |
GUAAACA |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-30-P1a
Laf-Mir-30-P1b
Laf-Mir-30-P2a
Laf-Mir-30-P2b
Laf-Mir-30-P2d
|
Orthologues |
Aca-Mir-30-P1d
Ami-Mir-30-P1d
Bta-Mir-30-P1d
Cfa-Mir-30-P1d
Cja-Mir-30-P1d
Cli-Mir-30-P1d
Cmi-Mir-30-P1d3
Cmi-Mir-30-P1d4
Cpi-Mir-30-P1d
Cpo-Mir-30-P1d
Dno-Mir-30-P1d
Dre-Mir-30-P1d
Eca-Mir-30-P1d
Ete-Mir-30-P1d
Gga-Mir-30-P1d
Gja-Mir-30-P1d
Gmo-Mir-30-P1d
Hsa-Mir-30-P1d
Lch-Mir-30-P1d
Loc-Mir-30-P1d
Mal-Mir-30-P1d
Mdo-Mir-30-P1d
Mml-Mir-30-P1d
Mmr-Mir-30-P1d
Mmu-Mir-30-P1d
Mun-Mir-30-P1d
Neu-Mir-30-P1d
Oan-Mir-30-P1d
Ocu-Mir-30-P1d
Pab-Mir-30-P1d
Pbv-Mir-30-P1d
Rno-Mir-30-P1d
Sha-Mir-30-P1d
Spt-Mir-30-P1d
Sto-Mir-30-P1d3
Sto-Mir-30-P1d4
Tgu-Mir-30-P1d
Tni-Mir-30-P1d
Xla-Mir-30-P1d1
Xla-Mir-30-P1d2
Xtr-Mir-30-P1d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010061.1: 20101256-20101319 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUCCGUUUUUUCUGGGCAGUCUUUGCUACUGUAAACAUCCUUGACUGGAAGCUGUAAGGUGUUCAGAGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACGGUCGUCCCCGGCUGCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCUCCGUUUUUUCUGGG----| UU UA UU GUAAGGU
CAGUCU GC CUGUAAACAUCC GACUGGAAGCU G
GUCGGA CG GACAUUUGUAGG CUGACUUUCGA U
GCGUCGGCCCCUGCUGGCACC^ -- GC -- GGAGACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Laf-Mir-30-P1d_5p |
mirBase accession | None |
Sequence |
0- UGUAAACAUCCUUGACUGGAAGCU -24
Get sequence
|
Star sequence |
Laf-Mir-30-P1d_3p* |
mirBase accession | None |
Sequence |
42- CUUUCAGUCGGAUGUUUACAGC -64
Get sequence
|