Mir-30-P2a

MirGeneDB ID

Laf-Mir-30-P2a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

African bush elephant (Loxodonta africana)

MiRBase ID

Paralogues

Laf-Mir-30-P1a Laf-Mir-30-P1b Laf-Mir-30-P1d Laf-Mir-30-P2b Laf-Mir-30-P2d

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000001905.1_Loxafr3.0)

GL010035.1: 79612275-79612334 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCCUCCCUUUGAAACCGAGUUUCAGUUCAUGUAAACAUCCUACACUCAGCUGUGGUGCGUGGAUUGGCUGGGAGGUGGAUGUUUACUUCAGCUGGCUUGGAAUAUCAACCACCUAACAU

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Structure

        10            20        30        40         50         
GCCCUCCCUUUGAAACC----|   UU     CAU          U  A-       GUGGUG 
                     GAGU  CAGUU   GUAAACAUCC AC  CUCAGCU      C
                     UUCG  GUCGA   CAUUUGUAGG UG  GGGUCGG      G
UACAAUCCACCAACUAUAAGG^   --     CUU          -  GA       UUAGGU 
.       110       100          90        80         70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Wh

Mature sequence

Laf-Mir-30-P2a_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

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Star sequence

Laf-Mir-30-P2a_3p*

mirBase accession

None

Sequence

38- CUGGGAGGUGGAUGUUUACUUC -60

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