| MirGeneDB ID | Laf-Mir-30-P2a |
|---|---|
| Family name | MIR-30 (all species) |
| Seed | GUAAACA |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-30-P1a Laf-Mir-30-P1b Laf-Mir-30-P1d Laf-Mir-30-P2b Laf-Mir-30-P2d |
| Orthologues | Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010035.1: 79612275-79612334 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GCCCUCCCUUUGAAACCGAGUUUCAGUUCAUGUAAACAUCCUACACUCAGCUGUGGUGCGUGGAUUGGCUGGGAGGUGGAUGUUUACUUCAGCUGGCUUGGAAUAUCAACCACCUAACAUGet precursor sequence |
| Structure | 10 20 30 40 50 GCCCUCCCUUUGAAACC----| UU CAU U A- GUGGUG GAGU CAGUU GUAAACAUCC AC CUCAGCU C UUCG GUCGA CAUUUGUAGG UG GGGUCGG G UACAAUCCACCAACUAUAAGG^ -- CUU - GA UUAGGU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Laf-Mir-30-P2a_5p |
| mirBase accession | None |
| Sequence |
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
|
| Star sequence | Laf-Mir-30-P2a_3p* |
| mirBase accession | None |
| Sequence |
38- CUGGGAGGUGGAUGUUUACUUC -60
Get sequence
|
