MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-30-P2a

Family name MIR-30 (all species)
Seed GUAAACA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-30-P1a  Spt-Mir-30-P1b  Spt-Mir-30-P1d  Spt-Mir-30-P2b  Spt-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cja-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Eca-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Laf-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmr-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Neu-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pab-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01012160.1: 1437841-1437900 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUAUUCACUAACACUGAUUUUUAGUUCAUGUAAACAUCCUACACUCAGCUCUAACACACGGAAUGGCUGGGAGGUGGAUGUUUACCUCAACUGAUUUGGAAAGGCAGCCUUCCUGAAU
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Structure
        10        20          30        40         50         
CAGUAUUCACUAACACUGAUUU--|     CAU          U  A-       CUAACA 
                        UUAGUU   GUAAACAUCC AC  CUCAGCU      C
                        AGUCAA   CAUUUGUAGG UG  GGGUCGG      A
UAAGUCCUUCCGACGGAAAGGUUU^     CUC          -  GA       UAAGGC 
.       110       100        90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Mature sequence

Spt-Mir-30-P2a_5p (predicted)

mirBase accessionNone
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Spt-Mir-30-P2a_3p* (predicted)

mirBase accessionNone
Sequence
38- CUGGGAGGUGGAUGUUUACCUC -60
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