Mir-30-P2a

MirGeneDB ID

Eca-Mir-30-P2a

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-30b

Paralogues

Eca-Mir-30-P1a Eca-Mir-30-P1b Eca-Mir-30-P1d Eca-Mir-30-P2b Eca-Mir-30-P2d

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Laf-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009156.1: 77314898-77314957 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2a)

Mir-30-P2a CM009156.1: 77314898-77314957 [-] UCSC Ensembl
Mir-30-P1a CM009156.1: 77319230-77319291 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGUCCUGCUUUAAACCAAGUUUCAGUUCAUGUAAACAUCCUACACUCAGCUGUACUACAUGGAUUGGCUGGGAGGUGGAUGUUUACUUCAGCUGACUUGGAAUAUCAGCCAUUAACCUA

Get precursor sequence

Structure

        10            20        30        40         50         
AAGUCCUGCUUUAAACC----|  UU      CAU          U  A-       GUACUA 
                     AAG  UCAGUU   GUAAACAUCC AC  CUCAGCU      C
                     UUC  AGUCGA   CAUUUGUAGG UG  GGGUCGG      A
AUCCAAUUACCGACUAUAAGG^  --      CUU          -  GA       UUAGGU 
.       110       100          90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-30-P2a_5p

mirBase accession

MIMAT0013005

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

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Star sequence

Eca-Mir-30-P2a_3p*

mirBase accession

None

Sequence

38- CUGGGAGGUGGAUGUUUACUUC -60

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