Mir-30-P2a1

MirGeneDB ID

Xla-Mir-30-P2a1

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xla-Mir-30-P2a2 Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xla-Mir-30-P2d1 Xla-Mir-30-P2d2

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Laf-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Sha-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xtr-Mir-30-P2a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030734.1: 146324081-146324140 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGCCGGCUGAGACGCUCCACUUUAGUUUAUGUAAACAUCCUACACUCAGCUCCAAUGUACGCUCUGACUGGGUGGGGGGUGUUUGCUUCGACUGAUCUGGAAACUCUGCGGAUUGAAAC

Get precursor sequence

Structure

        10          20        30        40        50         
CUGCCGGCUGAGACGCU--|  CU      UAU          UA       CUCCAAUG 
                   CCA  UUAGUU   GUAAACAUCC  CACUCAG        U
                   GGU  AGUCAG   CGUUUGUGGG  GUGGGUC        A
CAAAGUUAGGCGUCUCAAA^  CU      CUU          GG       AGUCUCGC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-30-P2a1_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

Get sequence

Star sequence

Xla-Mir-30-P2a1_3p*

mirBase accession

None

Sequence

38- CUGGGUGGGGGGUGUUUGCUUC -60

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