MirGeneDB 3.0

MirGeneDB ID

Xla-Mir-30-P2a1

Family name MIR-30 (all species)
Seed GUAAACA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xla-Mir-30-P2a2  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cja-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Eca-Mir-30-P2a  Ete-Mir-30-P2a  Gga-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Laf-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmr-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Neu-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pab-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xtr-Mir-30-P2a 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030734.1: 146324081-146324140 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCCGGCUGAGACGCUCCACUUUAGUUUAUGUAAACAUCCUACACUCAGCUCCAAUGUACGCUCUGACUGGGUGGGGGGUGUUUGCUUCGACUGAUCUGGAAACUCUGCGGAUUGAAAC
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Structure
        10          20        30        40        50         
CUGCCGGCUGAGACGCU--|  CU      UAU          UA       CUCCAAUG 
                   CCA  UUAGUU   GUAAACAUCC  CACUCAG        U
                   GGU  AGUCAG   CGUUUGUGGG  GUGGGUC        A
CAAAGUUAGGCGUCUCAAA^  CU      CUU          GG       AGUCUCGC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Em
Mature sequence

Xla-Mir-30-P2a1_5p

mirBase accessionNone
Sequence
0- UGUAAACAUCCUACACUCAGCU -22
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Star sequence

Xla-Mir-30-P2a1_3p*

mirBase accessionNone
Sequence
38- CUGGGUGGGGGGUGUUUGCUUC -60
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