MirGeneDB ID | Xla-Mir-30-P2a1 |
Family name |
MIR-30 (all species) |
Seed |
GUAAACA |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-30-P1a1
Xla-Mir-30-P1a2
Xla-Mir-30-P1b1
Xla-Mir-30-P1b2
Xla-Mir-30-P1d1
Xla-Mir-30-P1d2
Xla-Mir-30-P2a2
Xla-Mir-30-P2b1
Xla-Mir-30-P2b2
Xla-Mir-30-P2d1
Xla-Mir-30-P2d2
|
Orthologues |
Aca-Mir-30-P2a
Ami-Mir-30-P2a
Bta-Mir-30-P2a
Cfa-Mir-30-P2a
Cja-Mir-30-P2a
Cmi-Mir-30-P2a
Cpi-Mir-30-P2a
Cpo-Mir-30-P2a
Dno-Mir-30-P2a
Dre-Mir-30-P2a
Eca-Mir-30-P2a
Ete-Mir-30-P2a
Gga-Mir-30-P2a
Gja-Mir-30-P2a
Gmo-Mir-30-P2a
Hsa-Mir-30-P2a
Laf-Mir-30-P2a
Lch-Mir-30-P2a
Loc-Mir-30-P2a
Mal-Mir-30-P2a
Mdo-Mir-30-P2a
Mml-Mir-30-P2a
Mmr-Mir-30-P2a
Mmu-Mir-30-P2a
Mun-Mir-30-P2a
Neu-Mir-30-P2a
Oan-Mir-30-P2a
Ocu-Mir-30-P2a
Pab-Mir-30-P2a
Pbv-Mir-30-P2a
Rno-Mir-30-P2a
Sha-Mir-30-P2a
Spt-Mir-30-P2a
Sto-Mir-30-P2a
Tgu-Mir-30-P2a
Tni-Mir-30-P2a
Xtr-Mir-30-P2a
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030734.1: 146324081-146324140 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCCGGCUGAGACGCUCCACUUUAGUUUAUGUAAACAUCCUACACUCAGCUCCAAUGUACGCUCUGACUGGGUGGGGGGUGUUUGCUUCGACUGAUCUGGAAACUCUGCGGAUUGAAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGCCGGCUGAGACGCU--| CU UAU UA CUCCAAUG
CCA UUAGUU GUAAACAUCC CACUCAG U
GGU AGUCAG CGUUUGUGGG GUGGGUC A
CAAAGUUAGGCGUCUCAAA^ CU CUU GG AGUCUCGC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xla-Mir-30-P2a1_5p |
mirBase accession | None |
Sequence |
0- UGUAAACAUCCUACACUCAGCU -22
Get sequence
|
Star sequence |
Xla-Mir-30-P2a1_3p* |
mirBase accession | None |
Sequence |
38- CUGGGUGGGGGGUGUUUGCUUC -60
Get sequence
|